Package: pcev 2.2.2

Maxime Turgeon

pcev: Principal Component of Explained Variance

Principal component of explained variance (PCEV) is a statistical tool for the analysis of a multivariate response vector. It is a dimension- reduction technique, similar to Principal component analysis (PCA), that seeks to maximize the proportion of variance (in the response vector) being explained by a set of covariates.

Authors:Maxime Turgeon [aut, cre], Aurelie Labbe [aut], Karim Oualkacha [aut], Stepan Grinek [aut]

pcev_2.2.2.tar.gz
pcev_2.2.2.zip(r-4.7)pcev_2.2.2.zip(r-4.6)pcev_2.2.2.zip(r-4.5)
pcev_2.2.2.tgz(r-4.6-any)pcev_2.2.2.tgz(r-4.5-any)
pcev_2.2.2.tar.gz(r-4.7-any)pcev_2.2.2.tar.gz(r-4.6-any)
pcev_2.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
pcev/json (API)

# Install 'pcev' in R:

install.packages('pcev', repos = c('https://greenwoodlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/greenwoodlab/pcev/issues

Datasets:

index - Methylation values around BLK gene
methylation - Methylation values around BLK gene
methylation2 - Methylation values around BLK gene
pheno - Methylation values around BLK gene
pheno2 - Methylation values around BLK gene
position - Methylation values around BLK gene
position2 - Methylation values around BLK gene

On CRAN:

4.30 score 4 stars 9 scripts 208 downloads 8 exports 2 dependencies

Last updated from:f54217f17f. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	109
source / vignettes	OK	181
linux-release-x86_64	OK	108
macos-release-arm64	OK	152
macos-oldrel-arm64	OK	138
windows-devel	OK	92
windows-release	OK	68
windows-oldrel	OK	67
wasm-release	OK	100

Exports:computePCEV estimatePcev PcevBlock PcevClassical PcevSingular permutePval roysPval wilksPval

Dependencies:corpcor RMTstat

Principal Component of Explained Variance

Rendered frompcev.Rnwusingknitr::knitr

Last update: 2018-02-03
Started: 2015-11-11

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
pcev: A package for computing principal components of explained variance.	pcev-package
Principal Component of Explained Variance	computePCEV
Estimation of PCEV	estimatePcev estimatePcev.default estimatePcev.PcevBlock estimatePcev.PcevClassical estimatePcev.PcevSingular
Methylation values around BLK gene	index methylation methylation2 pheno pheno2 position position2
Constructor functions for the different pcev objects	PcevBlock PcevClassical PcevObj PcevSingular
Permutation p-value	permutePval permutePval.default permutePval.PcevBlock permutePval.PcevClassical permutePval.PcevSingular
Roy's largest root exact test	roysPval roysPval.default roysPval.PcevBlock roysPval.PcevClassical roysPval.PcevSingular
Wilks' lambda exact test	wilksPval wilksPval.default wilksPval.PcevBlock wilksPval.PcevClassical wilksPval.PcevSingular